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    LOC4346499 fasciclin-like arabinogalactan protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346499, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346499
    Gene description
    fasciclin-like arabinogalactan protein 2
    Locus tag
    OSNPB_090248100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1695_A02.4
    Expression
    Biased expression in flowers (RPKM 61.5), roots before flowering (RPKM 24.5) and 1 other tissue See more
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    Genomic context

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    See LOC4346499 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8001335..8005003)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3654953..3658615)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene auxin transport protein BIG-like Neighboring gene D-aminoacyl-tRNA deacylase Neighboring gene FRIGIDA-like protein 3 Neighboring gene FRIGIDA-like protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fasciclin-like arabinogalactan protein 2
    Names
    Os09g0248100
    P0499G10.19
    putative endosperm specific protein SC3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      8001335..8005003
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756362.3 → XP_015611848.1  fasciclin-like arabinogalactan protein 2

      UniProtKB/TrEMBL
      A0A0P0XKW4, A2YYW2, Q0J385, Q6K489
      Conserved Domains (2) summary
      pfam02469
      Location:201 → 332
      Fasciclin; Fasciclin domain
      cl02663
      Location:39 → 110
      Fasciclin; Fasciclin domain
    Nucleotide Protein
    Heading Accession and Version

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