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    LOC4325290 ABC transporter B family member 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325290, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325290
    Gene description
    ABC transporter B family member 4
    Locus tag
    OSNPB_010696600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    mdr8; OJ1116_H09.11
    Expression
    Broad expression in roots before flowering (RPKM 43.0), flower buds (RPKM 7.1) and 4 other tissues See more
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    Genomic context

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    See LOC4325290 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29413886..29420857)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28825655..28832656)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272654 Neighboring gene two-pore potassium channel 2 Neighboring gene uncharacterized LOC9271656 Neighboring gene uncharacterized LOC107279517 Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene UDP-glycosyltransferase 88B1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type oligopeptide transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter B family member 4; ABC transporter B family member 9
    Names
    MDR-like ABC transporter
    Os01g0696600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29413886..29420857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761603.3 → XP_015617089.1  ABC transporter B family member 9 isoform X1

      UniProtKB/TrEMBL
      A2WU37, Q7FMW3
      Conserved Domains (1) summary
      PTZ00265
      Location:8 → 1269
      PTZ00265; multidrug resistance protein (mdr1); Provisional

    2. XM_026020262.2 → XP_025876047.1  ABC transporter B family member 4 isoform X2

      UniProtKB/TrEMBL
      A2WU37
      Conserved Domains (1) summary
      cl28181
      Location:14 → 1149
      AAA; ATPases associated with a variety of cellular activities
    Nucleotide Protein
    Heading Accession and Version

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