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    LOC4351421 protein HEAT STRESS TOLERANT DWD 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351421, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4351421
    Gene description
    protein HEAT STRESS TOLERANT DWD 1
    Locus tag
    OSNPB_120132400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RIP1
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    Genomic context

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    See LOC4351421 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1586616..1590888, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1562189..1566536, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351417 Neighboring gene CBL-interacting protein kinase 32-like Neighboring gene calmodulin-like protein 3 Neighboring gene uncharacterized LOC107279781 Neighboring gene protein ZINC INDUCED FACILITATOR 1-like Neighboring gene small nucleolar RNA Z247

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development. Han MJ, et al. Plant Cell Physiol, 2006 Nov. PMID 16990291
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein HEAT STRESS TOLERANT DWD 1
    Names
    Os12g0132400
    immature pollen 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      1586616..1590888 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764372.3 → XP_015619858.1  protein HEAT STRESS TOLERANT DWD 1

      UniProtKB/TrEMBL
      B9G994, Q1HFN6
      Conserved Domains (3) summary
      sd00039
      Location:225 → 265
      7WD40; WD40 repeat [structural motif]
      pfam12265
      Location:42 → 110
      CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
      cl29593
      Location:156 → 391
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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