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    LOC4326391 transcription factor PCL1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326391, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4326391
    Gene description
    transcription factor PCL1-like
    Locus tag
    OSNPB_010971800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PCL1; OsPCL1; OsJ_04927
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    Genomic context

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    See LOC4326391 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43526912..43528211, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42874259..42875558, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g11290, chloroplastic Neighboring gene uncharacterized LOC4323848 Neighboring gene pumilio homolog 1 Neighboring gene probable E3 ubiquitin-protein ligase RHC2A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor PCL1
    Names
    P0518C01.17
    Protein PHYTOCLOCK 1 homolog
    induced protein MgI1
    putative transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401652.1 → NP_001388581.1  transcription factor PCL1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is intronless.
      Source sequence(s)
      AP014957, AY581256
      UniProtKB/Swiss-Prot
      A0A0N7KEH5, Q6PT61, Q94DH3

    2. NM_001401653.1 → NP_001388582.1  transcription factor PCL1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an intron.
      Source sequence(s)
      AP014957
      UniProtKB/Swiss-Prot
      A0A0N7KEH5, Q6PT61, Q94DH3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43526912..43528211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94DH3.1 GenPept UniProtKB/Swiss-Prot:Q94DH3

    Gene LinkOut

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    Research Materials