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    LOC4345851 pentatricopeptide repeat-containing protein At1g09410, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345851, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345851
    Gene description
    pentatricopeptide repeat-containing protein At1g09410, mitochondrial
    Locus tag
    OSNPB_080481000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345851 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23901161..23903609, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23761358..23763814, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative WEB family protein At1g65010, chloroplastic Neighboring gene uncharacterized LOC112939915 Neighboring gene U-box domain-containing protein 15 Neighboring gene homeobox-leucine zipper protein HOX20-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g09410, mitochondrial
    Names
    OSJNBb0092C08.13-1
    OSJNBb0092C08.13-2
    Os08g0481000
    pentatricopeptide (PPR) repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      23901161..23903609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794316.3 → XP_015649802.1  pentatricopeptide repeat-containing protein At1g09410, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0XH11, Q0J4Y9, Q6Z236
      Conserved Domains (2) summary
      PLN03077
      Location:20 → 534
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:337 → 364
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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