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    LOC4344873 putative F-box/LRR-repeat protein 23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344873, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4344873
    Gene description
    putative F-box/LRR-repeat protein 23
    Locus tag
    OSNPB_080196200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344873 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5634863..5638529, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5584218..5587837, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative F-box/LRR-repeat protein 9 Neighboring gene putative F-box/LRR-repeat protein 23 Neighboring gene nuclear transcription factor Y subunit A-4 Neighboring gene putative F-box protein At5g38390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative F-box/LRR-repeat protein 23
    Names
    F-box protein family-like
    Os08g0196200
    P0035F08.33
    P0412D08.11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      5634863..5638529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793157.3 → XP_015648643.1  putative F-box/LRR-repeat protein 23 isoform X2

      UniProtKB/TrEMBL
      A0A0K2JMV4
      Conserved Domains (2) summary
      cd09293
      Location:94 → 132
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:12 → 37
      LRR_AMN1; leucine-rich repeat [structural motif]

    2. XM_066303650.1 → XP_066159747.1  putative F-box/LRR-repeat protein 23 isoform X1

      UniProtKB/TrEMBL
      A0A0K2JMV4, Q6Z069, Q6Z934
    Nucleotide Protein
    Heading Accession and Version

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