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    LOC4346853 uncharacterized protein At4g33100 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346853, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346853
    Gene description
    uncharacterized protein At4g33100
    Locus tag
    OSNPB_090361700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1506_A04.1-1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 16.4), flower buds (RPKM 12.7) and 6 other tissues See more
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    Genomic context

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    See LOC4346853 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (16175154..16178123, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (11818397..11821439, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene mitochondrial outer membrane protein porin 1-like Neighboring gene isochorismate synthase 1, chloroplastic Neighboring gene uncharacterized LOC136351766 Neighboring gene aminopeptidase M1-C-like Neighboring gene aminopeptidase M1-D-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidic acid transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial intermembrane space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein At4g33100
    Names
    Os09g0361700

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      16175154..16178123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756377.3 → XP_015611863.1  uncharacterized protein At4g33100

      UniProtKB/TrEMBL
      A0A0P0XLB8, B8BET3, Q0J2B6, Q6K4F7
      Conserved Domains (1) summary
      PLN03079
      Location:29 → 102
      PLN03079; Uncharacterized protein At4g33100; Provisional
    Nucleotide Protein
    Heading Accession and Version

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