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    LOC9271365 phospholipid-transporting ATPase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271365, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9271365
    Gene description
    phospholipid-transporting ATPase 2
    Locus tag
    OSNPB_040353000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 7.4), leaves before flowering (RPKM 6.6) and 6 other tissues See more
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    Genomic context

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    See LOC9271365 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (17190722..17204738, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (16843338..16857124, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356381 Neighboring gene pentatricopeptide repeat-containing protein At2g13600-like Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC9267440 Neighboring gene uncharacterized LOC107280629

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase 2
    Names
    Os04g0353000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      17190722..17204738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309356.1 → XP_066165453.1  phospholipid-transporting ATPase 2 isoform X2

      UniProtKB/TrEMBL
      B8BDF9

    2. XM_015781319.3 → XP_015636805.1  phospholipid-transporting ATPase 2 isoform X1

      UniProtKB/TrEMBL
      B8BDF9
      Conserved Domains (2) summary
      pfam13246
      Location:434 → 533
      Cation_ATPase; Cation transport ATPase (P-type)
      cl21460
      Location:18 → 904
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    3. XM_015781322.3 → XP_015636808.1  phospholipid-transporting ATPase 2 isoform X1

      UniProtKB/TrEMBL
      B8BDF9
      Conserved Domains (2) summary
      pfam13246
      Location:434 → 533
      Cation_ATPase; Cation transport ATPase (P-type)
      cl21460
      Location:18 → 904
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    RNA

    1. XR_001545613.3 RNA Sequence

    2. XR_010740661.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials