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    LOC4327373 replication protein A 70 kDa DNA-binding subunit D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327373, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327373
    Gene description
    replication protein A 70 kDa DNA-binding subunit D
    Locus tag
    OSNPB_010838001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0031D11.8
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 11.9), roots before flowering (RPKM 10.8) and 6 other tissues See more
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    Genomic context

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    See LOC4327373 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36563160..36575057)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35938434..35949996)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase AFC1 Neighboring gene uncharacterized LOC136356259 Neighboring gene uncharacterized LOC4327374 Neighboring gene uncharacterized LOC9271243 Neighboring gene uncharacterized LOC107280150

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    replication protein A 70 kDa DNA-binding subunit D
    Names
    Os01g0838001
    Os01g0838100
    helicase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      36563160..36575057
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766110.3 → XP_015621596.1  replication protein A 70 kDa DNA-binding subunit D

      UniProtKB/TrEMBL
      Q5NA16
      Conserved Domains (3) summary
      cd04476
      Location:281 → 431
      RPA1_DBD_C; RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which ...
      cd04480
      Location:21 → 109
      RPA1_DBD_A_like; RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
      cd04481
      Location:144 → 243
      RPA1_DBD_B_like; RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ...
    Nucleotide Protein
    Heading Accession and Version

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