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    LOC4341049 U-box domain-containing protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341049, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341049
    Gene description
    U-box domain-containing protein 6
    Locus tag
    OSNPB_060480000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341049 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (17112541..17118939, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (16264254..16270850, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene eugenol synthase 1 Neighboring gene small nucleolar RNA R71 Neighboring gene protein RADIALIS-like 1 Neighboring gene uncharacterized LOC9270989

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 6
    Names
    Os06g0480000
    P0618D11.21
    armadillo repeat containing protein-like
    putative bg55 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      17112541..17118939 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788715.3 → XP_015644201.1  U-box domain-containing protein 6

      UniProtKB/TrEMBL
      A0A0P0WWN4, A2YCZ3, A3BBT1, Q69Y81
      Conserved Domains (2) summary
      smart00504
      Location:273 → 336
      Ubox; Modified RING finger domain
      PLN03200
      Location:642 → 705
      PLN03200; cellulose synthase-interactive protein; Provisional

    2. XM_015788716.3 → XP_015644202.1  U-box domain-containing protein 6

      UniProtKB/TrEMBL
      A0A0P0WWN4, A2YCZ3, A3BBT1, Q69Y81
      Conserved Domains (2) summary
      smart00504
      Location:273 → 336
      Ubox; Modified RING finger domain
      PLN03200
      Location:642 → 705
      PLN03200; cellulose synthase-interactive protein; Provisional

    3. XM_015788713.3 → XP_015644199.1  U-box domain-containing protein 6

      UniProtKB/TrEMBL
      A0A0P0WWN4, A2YCZ3, A3BBT1, Q69Y81
      Conserved Domains (2) summary
      smart00504
      Location:273 → 336
      Ubox; Modified RING finger domain
      PLN03200
      Location:642 → 705
      PLN03200; cellulose synthase-interactive protein; Provisional

    4. XM_015788714.3 → XP_015644200.1  U-box domain-containing protein 6

      UniProtKB/TrEMBL
      A0A0P0WWN4, A2YCZ3, A3BBT1, Q69Y81
      Conserved Domains (2) summary
      smart00504
      Location:273 → 336
      Ubox; Modified RING finger domain
      PLN03200
      Location:642 → 705
      PLN03200; cellulose synthase-interactive protein; Provisional

    5. XM_015788717.3 → XP_015644203.1  U-box domain-containing protein 6

      UniProtKB/TrEMBL
      A0A0P0WWN4, A2YCZ3, A3BBT1, Q69Y81
      Conserved Domains (2) summary
      smart00504
      Location:273 → 336
      Ubox; Modified RING finger domain
      PLN03200
      Location:642 → 705
      PLN03200; cellulose synthase-interactive protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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