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    LOC4349522 uncharacterized LOC4349522 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349522, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349522
    Gene description
    uncharacterized LOC4349522
    Locus tag
    OSNPB_100580700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ankyrin
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    Genomic context

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    See LOC4349522 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23878663..23881722)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23186399..23189470)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349521 Neighboring gene uncharacterized LOC107278991 Neighboring gene ATP-dependent Clp protease proteolytic subunit 4, chloroplastic Neighboring gene uncharacterized LOC4349524

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349522
    Names
    Os10g0580700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23878663..23881722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757296.3 → XP_015612782.1  uncharacterized protein LOC4349522

      UniProtKB/TrEMBL
      A0A5S6RCX9, A3C7Q1, Q7X6P5, Q9FRM5
      Conserved Domains (4) summary
      sd00045
      Location:62 → 92
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:31 → 81
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:66 → 157
      Ank_2; Ankyrin repeats (3 copies)
      cl40437
      Location:127 → 216
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
    Nucleotide Protein
    Heading Accession and Version

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