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    LOC4336204 anaphase-promoting complex subunit 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336204, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4336204
    Gene description
    anaphase-promoting complex subunit 2
    Locus tag
    OSNPB_040484800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 12.6), flower buds (RPKM 12.5) and 6 other tissues See more
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    Genomic context

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    See LOC4336204 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24725973..24733633)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24229227..24237025)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g26922-like Neighboring gene uncharacterized LOC136356276 Neighboring gene predicted GPI-anchored protein 58 Neighboring gene elongator complex protein 3-like Neighboring gene 26S proteasome non-ATPase regulatory subunit 6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in metaphase/anaphase transition of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K11-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of anaphase-promoting complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    anaphase-promoting complex subunit 2
    Names
    Os04g0484800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419590.1 → NP_001406519.1  anaphase-promoting complex subunit 2

      Status: VALIDATED

      Source sequence(s)
      AK068962
      UniProtKB/TrEMBL
      A0A0P0WBL9, B7EFN8, B8AVW5, B9FFT0, Q0JC96

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      24725973..24733633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780314.3 → XP_015635800.1  anaphase-promoting complex subunit 2 isoform X1

      UniProtKB/TrEMBL
      B9FFT0
      Conserved Domains (2) summary
      smart00182
      Location:536 → 684
      CULLIN; Cullin
      pfam08672
      Location:802 → 861
      ANAPC2; Anaphase promoting complex (APC) subunit 2
    Nucleotide Protein
    Heading Accession and Version

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