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    LOC4341832 cold-responsive protein kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341832, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341832
    Gene description
    cold-responsive protein kinase 1
    Locus tag
    OSNPB_060676600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1153E06.9; P0710B08.3
    Expression
    Broad expression in roots before flowering (RPKM 20.2), leaves after flowering (RPKM 16.8) and 6 other tissues See more
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    Genomic context

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    See LOC4341832 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28956600..28960882, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28090118..28094417, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene metal transporter Nramp3-like Neighboring gene uncharacterized LOC107281176 Neighboring gene probable alpha-glucosidase Os06g0675700 Neighboring gene U5 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cold-responsive protein kinase 1
    Names
    Os06g0676600
    receptor protein kinase PERK-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28956600..28960882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785772.3 → XP_015641258.1  cold-responsive protein kinase 1 isoform X1

      UniProtKB/TrEMBL
      B8B1F6, B9FQH2, Q0DA57, Q653V5
      Conserved Domains (1) summary
      cd14066
      Location:52 → 319
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_066311943.1 → XP_066168040.1  cold-responsive protein kinase 1 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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