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    LOC4351313 pentatricopeptide repeat-containing protein At4g18840 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351313, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351313
    Gene description
    pentatricopeptide repeat-containing protein At4g18840
    Locus tag
    OSNPB_120114400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 1.7), flower buds (RPKM 1.6) and 6 other tissues See more
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    Genomic context

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    See LOC4351313 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (742341..746054)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (718474..722131)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase WNK8 Neighboring gene uncharacterized LOC4351312 Neighboring gene non-specific lipid-transfer protein 4-like Neighboring gene non-specific lipid-transfer protein 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g18840
    Names
    Os12g0114400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      742341..746054
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763293.3 → XP_015618779.1  pentatricopeptide repeat-containing protein At4g18840 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XPB0, A3CEB9, Q2QYL5
      Conserved Domains (2) summary
      PLN03081
      Location:51 → 500
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:248 → 275
      PPR; PPR repeat [structural motif]

    2. XM_026021828.2 → XP_025877613.1  pentatricopeptide repeat-containing protein At4g18840 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XPB0, A3CEB9, Q2QYL5
      Conserved Domains (2) summary
      PLN03081
      Location:51 → 500
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:248 → 275
      PPR; PPR repeat [structural motif]

    3. XM_066306122.1 → XP_066162219.1  pentatricopeptide repeat-containing protein At4g18840 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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