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    LOC4346117 proteasome subunit beta type-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346117, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346117
    Gene description
    proteasome subunit beta type-1-like
    Locus tag
    OSNPB_080529100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1770_H02.17
    Expression
    Ubiquitous expression in flowers (RPKM 6.1), flower buds (RPKM 4.2) and 6 other tissues See more
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    Genomic context

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    See LOC4346117 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26489012..26491221)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26342339..26344528)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene FHA domain-containing protein FHA2 Neighboring gene probable auxin efflux carrier component 5c Neighboring gene CBS domain-containing protein CBSX6-like Neighboring gene putative F-box/kelch-repeat protein At1g15680

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit beta type-1-like
    Names
    Os08g0529100
    putative proteasome subunit beta type 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26489012..26491221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793453.3 → XP_015648939.1  proteasome subunit beta type-1-like

      UniProtKB/TrEMBL
      B8B967, B9G1X5, Q6ZIB4
      Conserved Domains (1) summary
      cd03757
      Location:4 → 219
      proteasome_beta_type_1; proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that ...
    Nucleotide Protein
    Heading Accession and Version

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