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    LOC4341594 nuclear intron maturase 4, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341594, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341594
    Gene description
    nuclear intron maturase 4, mitochondrial
    Locus tag
    OSNPB_060634100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341594 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (26570771..26578318, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25707179..25715337, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene amino acid transporter AVT6A Neighboring gene uncharacterized LOC4341592 Neighboring gene uncharacterized LOC4341593 Neighboring gene nudix hydrolase 2 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homing of group II introns IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear intron maturase 4, mitochondrial
    Names
    OSJNBa0019I19.1
    Os06g0634100
    P0505A04.41
    type II intron maturase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      26570771..26578318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026187.2 → XP_025881972.1  nuclear intron maturase 4, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A3BDU0, B8B0G5, Q67V45
      Conserved Domains (2) summary
      cd01651
      Location:181 → 429
      RT_G2_intron; Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with ...
      pfam01348
      Location:596 → 679
      Intron_maturas2; Type II intron maturase

    2. XM_015787943.3 → XP_015643429.1  nuclear intron maturase 4, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A3BDU0, B8B0G5, Q67V45
      Conserved Domains (2) summary
      cd01651
      Location:181 → 429
      RT_G2_intron; Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with ...
      pfam01348
      Location:596 → 679
      Intron_maturas2; Type II intron maturase

    3. XM_015787944.3 → XP_015643430.1  nuclear intron maturase 4, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A3BDU0, B8B0G5, Q67V45
      Conserved Domains (2) summary
      cd01651
      Location:181 → 429
      RT_G2_intron; Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with ...
      pfam01348
      Location:596 → 679
      Intron_maturas2; Type II intron maturase

    4. XM_015787948.3 → XP_015643434.1  nuclear intron maturase 4, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8B0G5
      Conserved Domains (2) summary
      cd01651
      Location:179 → 427
      RT_G2_intron; RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable ...
      pfam01348
      Location:594 → 677
      Intron_maturas2; Type II intron maturase
    Nucleotide Protein
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