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    LOC4335704 trihelix transcription factor ASR3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335704, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4335704
    Gene description
    trihelix transcription factor ASR3
    Locus tag
    OSNPB_040397500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 9.4), flower buds (RPKM 9.1) and 6 other tissues See more
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    Genomic context

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    See LOC4335704 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (19980608..19983639, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (19612819..19616090, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene chaperone protein ClpC1, chloroplastic-like Neighboring gene uncharacterized LOC107280807 Neighboring gene uncharacterized LOC136356084 Neighboring gene protein MHF1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    trihelix transcription factor ASR3
    Names
    Os04g0397500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      19980608..19983639 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781291.3 → XP_015636777.2  trihelix transcription factor ASR3

      UniProtKB/TrEMBL
      Q0JDK6, Q7XLG9
    Nucleotide Protein
    Heading Accession and Version

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