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    LOC4352928 sodium/hydrogen exchanger 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352928, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4352928
    Gene description
    sodium/hydrogen exchanger 8
    Locus tag
    OSNPB_120641100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NHA1; SOS1
    Expression
    Broad expression in roots before flowering (RPKM 55.6), flower buds (RPKM 42.9) and 5 other tissues See more
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    Genomic context

    See LOC4352928 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (28214145..28226776, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (27495769..27508846, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 70-1-like Neighboring gene actin-1-like Neighboring gene uncharacterized LOC4352930 Neighboring gene sucrose transport protein SUT2-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium:proton antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables sodium:proton antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in regulation of intracellular pH IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in sodium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    sodium/hydrogen exchanger 8
    Names
    Na+/H+ antiporter
    Os12g0641100
    putative Na+/H+ antiporter

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      28214145..28226776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763865.3XP_015619351.1  sodium/hydrogen exchanger 8

      UniProtKB/TrEMBL
      A0A6F8F8Q2, A0A8J8XWY1, B8BN82, B9GEH8, Q2QLI4, Q5ICN3
      Conserved Domains (2) summary
      COG0025
      Location:11442
      NhaP; NhaP-type Na+/H+ or K+/H+ antiporter [Inorganic ion transport and metabolism]
      COG0664
      Location:715889
      Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

    RNA

    1. XR_010738509.1 RNA Sequence