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    LOC4342899 uncharacterized LOC4342899 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342899, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342899
    Gene description
    uncharacterized LOC4342899
    Locus tag
    OSNPB_070272400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342899 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (10153909..10157684)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (10064196..10068021)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357518 Neighboring gene desiccation-related protein At2g46140 Neighboring gene uncharacterized LOC107276281 Neighboring gene uncharacterized LOC9272721

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of ruffle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ruffle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342899
    Names
    LAs17 Binding protein-like
    OSJNBb0002J01.20
    Os07g0272400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      10153909..10157684
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789258.2 → XP_015644744.1  uncharacterized protein LOC4342899

      UniProtKB/TrEMBL
      A0A0P0X4Z1, A3BIJ2, Q6Z4J7
      Conserved Domains (2) summary
      cd11526
      Location:290 → 489
      SYLF_FYVE; The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins
      pfam01363
      Location:182 → 248
      FYVE; FYVE zinc finger
    Nucleotide Protein
    Heading Accession and Version

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