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    LOC4333167 alpha-copaene synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333167, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333167
    Gene description
    alpha-copaene synthase
    Locus tag
    OSNPB_030428200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 25.1) and flower buds (RPKM 22.3) See more
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    Genomic context

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    See LOC4333167 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18358835..18369482, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17902694..17912556, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable ubiquitin conjugation factor E4 Neighboring gene uncharacterized LOC112938237 Neighboring gene formin-like protein 20 Neighboring gene expansin-A31-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables terpene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-copaene synthase
    Names
    Os03g0428200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      18358835..18369482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774498.3 → XP_015629984.1  alpha-copaene synthase

      UniProtKB/TrEMBL
      B9F954, Q75I70
      Conserved Domains (1) summary
      cd00684
      Location:21 → 549
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
    Nucleotide Protein
    Heading Accession and Version

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