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    LOC4329087 protein IQ-DOMAIN 21 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329087, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329087
    Gene description
    protein IQ-DOMAIN 21
    Locus tag
    OSNPB_020299200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 14.0), flower buds (RPKM 2.2) and 1 other tissue See more
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    Genomic context

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    See LOC4329087 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (11507681..11513557)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (11478186..11484094)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355082 Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like Neighboring gene uncharacterized LOC9267258 Neighboring gene uncharacterized LOC4329088 Neighboring gene uncharacterized LOC4329089

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein IQ-DOMAIN 21
    Names
    OSJNBa0030M21.14
    Os02g0299200
    calmodulin-binding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      11507681..11513557
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768124.3 → XP_015623610.1  protein IQ-DOMAIN 21 isoform X1

      UniProtKB/TrEMBL
      B8AFW8

    2. XM_015768125.3 → XP_015623611.1  protein IQ-DOMAIN 21 isoform X2

      UniProtKB/TrEMBL
      B8AFW8, Q0E1V9, Q6K4R6
    Nucleotide Protein
    Heading Accession and Version

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