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    LOC4343494 uncharacterized LOC4343494 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343494, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4343494
    Gene description
    uncharacterized LOC4343494
    Locus tag
    OSNPB_070540200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 1.4), flowers (RPKM 1.4) and 6 other tissues See more
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    Genomic context

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    See LOC4343494 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21527483..21539128, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21299651..21311431, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable long-chain-alcohol O-fatty-acyltransferase 5 Neighboring gene cysteine-rich receptor-like protein kinase 10 Neighboring gene uncharacterized LOC9271129 Neighboring gene cysteine-rich receptor-like protein kinase 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343494
    Names
    Os07g0540200
    P0458H05.113

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21527483..21539128 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791863.3 → XP_015647349.1  uncharacterized protein LOC4343494

      UniProtKB/TrEMBL
      A0A0P0X792, B8B704, Q0D5R9, Q7XHK9

    2. XM_066312312.1 → XP_066168409.1  uncharacterized protein LOC4343494

      UniProtKB/TrEMBL
      A0A0P0X792, Q0D5R9, Q7XHK9

    3. XM_015791864.3 → XP_015647350.1  uncharacterized protein LOC4343494

      UniProtKB/TrEMBL
      A0A0P0X792, B8B704, Q0D5R9, Q7XHK9

    4. XM_026026732.2 → XP_025882517.1  uncharacterized protein LOC4343494

      UniProtKB/TrEMBL
      A0A0P0X792, B8B704, Q0D5R9, Q7XHK9

    RNA

    1. XR_001547733.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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