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    LOC4339966 E3 ubiquitin-protein ligase BIG BROTHER [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339966, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4339966
    Gene description
    E3 ubiquitin-protein ligase BIG BROTHER
    Locus tag
    OSNPB_060125800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BBI1
    Expression
    Biased expression in leaves after flowering (RPKM 171.8), roots after flowering (RPKM 162.2) and 3 other tissues See more
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    Genomic context

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    See LOC4339966 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1540530..1543233)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1383558..1386324)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939269 Neighboring gene oligopeptide transporter 7 Neighboring gene pentatricopeptide repeat-containing protein At5g08510 Neighboring gene uncharacterized LOC136356945 Neighboring gene probable transcriptional regulator SLK3 Neighboring gene probable receptor-like protein kinase At2g21480

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence. Li W, et al. Cell Res, 2011 May. PMID 21221134, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of organ growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase BIG BROTHER
    Names
    E3 ligase
    E3 ubiquitin ligase BIG BROTHER
    Os06g0125800
    P0425F02.32
    zinc finger protein-like
    zinc putative RING finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1540530..1543233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785385.3 → XP_015640871.1  E3 ubiquitin-protein ligase BIG BROTHER

      UniProtKB/TrEMBL
      A0A0P0WSI0, A3B7Y0, Q84K08, Q9LWV9
      Conserved Domains (1) summary
      cl17238
      Location:213 → 256
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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