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    LOC4345261 fasciclin-like arabinogalactan protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345261, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345261
    Gene description
    fasciclin-like arabinogalactan protein 1
    Locus tag
    OSNPB_080321000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0048E12.2
    Expression
    Biased expression in flowers (RPKM 65.7), flower buds (RPKM 42.7) and 3 other tissues See more
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    Genomic context

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    See LOC4345261 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14052455..14055424, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (13985120..13988215, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351341 Neighboring gene uncharacterized LOC4345260 Neighboring gene uncharacterized LOC107282040 Neighboring gene uncharacterized LOC107282023

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fasciclin-like arabinogalactan protein 1
    Names
    Os08g0321000
    P0005C02.108
    putative fasciclin-like arabinogalactan-protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14052455..14055424 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795277.3 → XP_015650763.1  fasciclin-like arabinogalactan protein 1

      UniProtKB/TrEMBL
      A2YTW2, A3BRV6, Q0J6G9, Q8H3S1
      Conserved Domains (1) summary
      pfam02469
      Location:200 → 331
      Fasciclin; Fasciclin domain
    Nucleotide Protein
    Heading Accession and Version

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