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    LOC9269664 uncharacterized LOC9269664 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269664, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9269664
    Gene description
    uncharacterized LOC9269664
    Locus tag
    OSNPB_090491644
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 15.5), leaves after flowering (RPKM 14.4) and 6 other tissues See more
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    Genomic context

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    See LOC9269664 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23355466..23358529, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18953658..18956768, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene polygalacturonase inhibitor 1-like Neighboring gene uncharacterized LOC136351756 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene uncharacterized LOC9271668 Neighboring gene uncharacterized LOC107277391

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC9269664
    Names
    Os09g0491644
    Os09g0491660

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23355466..23358529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756880.3 → XP_015612366.1  uncharacterized protein LOC9269664

      UniProtKB/TrEMBL
      B9G4A8
      Conserved Domains (1) summary
      cd00167
      Location:27 → 59
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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