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    LOC4336978 methyl-CpG-binding domain-containing protein 13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336978, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4336978
    Gene description
    methyl-CpG-binding domain-containing protein 13
    Locus tag
    OSNPB_040613800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

    See LOC4336978 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31626948..31631425, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31119411..31124163, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS17 Neighboring gene UDP-N-acetylglucosamine diphosphorylase 2 Neighboring gene probable potassium transporter 11 Neighboring gene Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR) Neighboring gene MADS-box transcription factor 31-like

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    methyl-CpG-binding domain-containing protein 13; uncharacterized protein LOC4336978
    Names
    Os04g0613800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31626948..31631425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781254.3XP_015636740.1  uncharacterized protein LOC4336978 isoform X3

      UniProtKB/TrEMBL
      A0A0P0WF27, B7E5C1
      Conserved Domains (1) summary
      cl00110
      Location:240
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...
    2. XM_015781251.3XP_015636737.1  methyl-CpG-binding domain-containing protein 13 isoform X2

      UniProtKB/TrEMBL
      B8AU52
      Conserved Domains (1) summary
      cd01396
      Location:35105
      MeCP2_MBD; MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding ...
    3. XM_015781250.3XP_015636736.1  methyl-CpG-binding domain-containing protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WEP6, A0A8J8XTR0, B8AU52, B9FXY5, Q0JA65
      Conserved Domains (1) summary
      cd01396
      Location:35105
      MeCP2_MBD; MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding ...