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    LOC4332503 probable xylan O-acetyltransferase 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332503, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332503
    Gene description
    probable xylan O-acetyltransferase 8
    Locus tag
    OSNPB_030291200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    XOAT8
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    Genomic context

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    See LOC4332503 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10166889..10171043)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10116105..10120341)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide phosphatase SAC8 Neighboring gene protein PMR5 Neighboring gene asparagine synthetase [glutamine-hydrolyzing] 1-like Neighboring gene protein trichome birefringence-like 28 Neighboring gene probable protein phosphatase 2C 32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biochemical characterization of rice xylan O-acetyltransferases. Zhong R, et al. Planta, 2018 Jun. PMID 29569182
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable xylan O-acetyltransferase 8
    Names
    Os03g0291200
    protein trichome birefringence-like 3
    xylan O-acetyltransferase 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      10166889..10171043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024151.2 → XP_025879936.1  probable xylan O-acetyltransferase 8 isoform X2

      UniProtKB/TrEMBL
      B8ALL7
      Conserved Domains (2) summary
      pfam13839
      Location:153 → 390
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:98 → 151
      PMR5N; PMR5 N terminal Domain

    2. XM_015776604.3 → XP_015632090.1  probable xylan O-acetyltransferase 8 isoform X1

      UniProtKB/Swiss-Prot
      Q0DSS6, Q10MX4
      UniProtKB/TrEMBL
      B8ALL7
      Conserved Domains (2) summary
      pfam13839
      Location:153 → 441
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:98 → 151
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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