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    LOC4332510 mitochondrial succinate-fumarate transporter 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332510, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332510
    Gene description
    mitochondrial succinate-fumarate transporter 1
    Locus tag
    OSNPB_030292200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 52.4), flower buds (RPKM 16.0) and 6 other tissues See more
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    Genomic context

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    See LOC4332510 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10222535..10225192)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10171781..10174465)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence-like 28 Neighboring gene probable protein phosphatase 2C 32 Neighboring gene uncharacterized LOC107280408 Neighboring gene mitogen-activated protein kinase kinase kinase 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables succinate:fumarate antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fumarate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in succinate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial succinate-fumarate transporter 1
    Names
    Os03g0292200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      10222535..10225192
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772486.3 → XP_015627972.1  mitochondrial succinate-fumarate transporter 1

      UniProtKB/TrEMBL
      A0A0P0VWD2, Q0DSS1, Q10MX0
      Conserved Domains (1) summary
      pfam00153
      Location:232 → 323
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein
    Heading Accession and Version

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