U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4329532 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329532, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4329532
    Gene description
    1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic
    Locus tag
    OSNPB_020528200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BE3; RBE3; SBE3
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4329532 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19833707..19845330, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19355808..19367580, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL80 Neighboring gene uncharacterized LOC4329531 Neighboring gene replication protein A 70 kDa DNA-binding subunit B Neighboring gene uncharacterized LOC136355337 Neighboring gene major pollen allergen Ole e 10-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice. Nagamatsu S, et al. Plant Mol Biol, 2022 Mar. PMID 35083581
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice.
      Title: Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,4-alpha-glucan branching enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycogen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in starch metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic
    Names
    Os02g0528200
    P0475F05.16
    branching enzyme-3
    rice starch branching enzyme
    starch branching enzyme 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      19833707..19845330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772017.3 → XP_015627503.1  1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic

      UniProtKB/TrEMBL
      A0A222NP86, B3VDJ4, D0TZK1, I6VRB8, Q0E0R5, Q40663, Q6H6P8
      Conserved Domains (2) summary
      PLN02447
      Location:69 → 825
      PLN02447; 1,4-alpha-glucan-branching enzyme
      TIGR04267
      Location:2 → 99
      mod_HExxH; HEXXH motif domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials