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    LOC4343770 protein ANTHESIS POMOTING FACTOR 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343770, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4343770
    Gene description
    protein ANTHESIS POMOTING FACTOR 1
    Locus tag
    OSNPB_070589400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1174_G05.3
    Expression
    Ubiquitous expression in mature seeds (RPKM 40.6), leaves after flowering (RPKM 20.4) and 6 other tissues See more
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    Genomic context

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    See LOC4343770 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24244826..24249413)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24020383..24025133)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343767 Neighboring gene LOB domain-containing protein 37 Neighboring gene scarecrow-like protein 32 Neighboring gene haze protective factor 1 Neighboring gene zinc finger protein 36-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ANTHESIS POMOTING FACTOR 1
    Names
    OSJNBb0005G07.130
    Os07g0589400
    WD domain, G-beta repeat domain-containing protein
    WD repeat-containing protein 82-B
    putative WD repeat protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24244826..24249413
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789540.3 → XP_015645026.1  protein ANTHESIS POMOTING FACTOR 1

      UniProtKB/TrEMBL
      B9FY69, Q84Z07
      Conserved Domains (2) summary
      sd00039
      Location:27 → 65
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:20 → 276
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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