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    LOC4331389 uncharacterized LOC4331389 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331389, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331389
    Gene description
    uncharacterized LOC4331389
    Locus tag
    OSNPB_030114800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ASL
    Expression
    Broad expression in roots before flowering (RPKM 126.1), flowers (RPKM 37.4) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (850248..853946)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (842391..846422)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene AAA-ATPase At2g46620 Neighboring gene uncharacterized LOC9272533 Neighboring gene mitochondrial import inner membrane translocase subunit TIM23-2 Neighboring gene early nodulin-like protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Variation of a major facilitator superfamily gene contributes to differential cadmium accumulation between rice subspecies. Yan H, et al. Nat Commun, 2019 Jun 12. PMID 31189898, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables molybdate ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in molybdate ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331389
    Names
    ABNORMAL SHOOT IN YOUTH LIKE
    DUF791 domain protein
    Os03g0114800
    molybdate-anion transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      850248..853946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776725.3 → XP_015632211.1  uncharacterized protein LOC4331389

      UniProtKB/TrEMBL
      A0A0P0VS59, A2XBQ9, Q0DVS8, Q8GZW6
      Conserved Domains (2) summary
      pfam05631
      Location:4 → 357
      MFS_5; Sugar-tranasporters, 12 TM
      cl17068
      Location:380 → 457
      AFD_class_I; Adenylate forming domain, Class I superfamily
    Nucleotide Protein
    Heading Accession and Version

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