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    LOC4326564 single-stranded DNA-binding protein, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326564, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4326564
    Gene description
    single-stranded DNA-binding protein, mitochondrial
    Locus tag
    OSNPB_010642900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 10.3), leaves before flowering (RPKM 9.4) and 6 other tissues See more
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    Genomic context

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    See LOC4326564 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26417707..26425035, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25835967..25843525, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281463 Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene auxin efflux carrier component 3a-like Neighboring gene homeobox-leucine zipper protein HOX3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    single-stranded DNA-binding protein, mitochondrial
    Names
    Os01g0642900
    P0510C12.21
    single-strand DNA binding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      26417707..26425035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027432.2 → XP_025883217.1  single-stranded DNA-binding protein, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0V5X6, A2WT49, Q0JKX3, Q5VP75
      Conserved Domains (1) summary
      pfam00436
      Location:91 → 203
      SSB; Single-strand binding protein family

    2. XM_015766877.3 → XP_015622363.1  single-stranded DNA-binding protein, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0V5X6, A2WT49, Q0JKX3, Q5VP75
      Conserved Domains (1) summary
      pfam00436
      Location:91 → 203
      SSB; Single-strand binding protein family

    3. XM_066311794.1 → XP_066167891.1  single-stranded DNA-binding protein, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0V5X6, Q0JKX3, Q5VP75

    4. XM_015766879.3 → XP_015622365.1  single-stranded DNA-binding protein, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0V5X6, A2WT49, Q0JKX3, Q5VP75
      Conserved Domains (1) summary
      pfam00436
      Location:91 → 203
      SSB; Single-strand binding protein family

    5. XM_015766876.3 → XP_015622362.1  single-stranded DNA-binding protein, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0V5X6, A2WT49, Q0JKX3, Q5VP75
      Conserved Domains (1) summary
      pfam00436
      Location:91 → 203
      SSB; Single-strand binding protein family
    Nucleotide Protein
    Heading Accession and Version

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