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    LOC4332744 eukaryotic translation initiation factor 2 subunit beta [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332744, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332744
    Gene description
    eukaryotic translation initiation factor 2 subunit beta
    Locus tag
    OSNPB_030333300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 68.8), leaves after flowering (RPKM 52.4) and 6 other tissues See more
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    Genomic context

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    See LOC4332744 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12370838..12375812)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12315689..12320678)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332742 Neighboring gene receptor-like protein kinase FERONIA Neighboring gene small nucleolar RNA SNORD34 Neighboring gene small nucleolar RNA SNORD34 Neighboring gene small nucleolar RNA SNORD34 Neighboring gene small nucleolar RNA SNORD34 Neighboring gene small nucleolar RNA SNORD34 Neighboring gene photosystem II repair protein PSB27-H1, chloroplastic Neighboring gene E3 ubiquitin ligase PARAQUAT TOLERANCE 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formation of cytoplasmic translation initiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in formation of translation preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of eukaryotic translation initiation factor 2 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 2 subunit beta
    Names
    Os03g0333300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      12370838..12375812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777284.3 → XP_015632770.1  eukaryotic translation initiation factor 2 subunit beta

      UniProtKB/TrEMBL
      A0A8J8Y2P5, B8ANY9, B9F8A8, Q0DS51, Q10LV9
      Conserved Domains (1) summary
      smart00653
      Location:140 → 249
      eIF2B_5; domain present in translation initiation factor eIF2B and eIF5

    2. XM_015777285.3 → XP_015632771.1  eukaryotic translation initiation factor 2 subunit beta

      UniProtKB/TrEMBL
      A0A8J8Y2P5, B8ANY9, B9F8A8, Q0DS51, Q10LV9
      Conserved Domains (1) summary
      smart00653
      Location:140 → 249
      eIF2B_5; domain present in translation initiation factor eIF2B and eIF5
    Nucleotide Protein
    Heading Accession and Version

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