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    LOC4327680 single myb histone 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327680, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327680
    Gene description
    single myb histone 4
    Locus tag
    OSNPB_010708000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    myb28
    Expression
    Ubiquitous expression in roots before flowering (RPKM 47.1), flower buds (RPKM 35.3) and 6 other tissues See more
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    Genomic context

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    See LOC4327680 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29993897..29999536)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29405602..29411370)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor LATE FLOWERING-like Neighboring gene uncharacterized LOC136355483 Neighboring gene glycylpeptide N-tetradecanoyltransferase 1 Neighboring gene uncharacterized LOC136357536 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    single myb histone 4
    Names
    DNA-binding protein MYB1-like
    Os01g0708000
    P0510F09.23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29993897..29999536
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766670.3 → XP_015622156.1  single myb histone 4 isoform X1

      UniProtKB/TrEMBL
      B8A8C4, B9EZ30
      Conserved Domains (2) summary
      smart00526
      Location:116 → 174
      H15; Domain in histone families 1 and 5
      cd11660
      Location:6 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    2. XM_015766671.3 → XP_015622157.1  single myb histone 4 isoform X2

      UniProtKB/TrEMBL
      B9EZ30, Q0JJZ1, Q8GUA0
      Conserved Domains (2) summary
      smart00526
      Location:118 → 172
      H15; Domain in histone families 1 and 5
      cd11660
      Location:6 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version

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