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    LOC4346245 proteasome subunit alpha type-7-A-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346245, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346245
    Gene description
    proteasome subunit alpha type-7-A-like
    Locus tag
    OSNPB_080548900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_00782; OsJ_000765; OJ1479_B11.3; OJ1112_E06.28
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 78.9), flower buds (RPKM 61.9) and 6 other tissues See more
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    Genomic context

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    See LOC4346245 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27680386..27684202)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27533295..27536896)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene thaumatin-like protein 1 Neighboring gene F-box protein At5g49610 Neighboring gene myb-related protein Zm38 Neighboring gene probable L-ascorbate peroxidase 4, peroxisomal

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteasomal protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, alpha-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit alpha type-7-A
    Names
    20S proteasome alpha subunit D-1
    20S proteasome subunit alpha-4-A
    LOC_Os08g43540
    proteasome alpha subunit
    NP_001409610.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422681.1 → NP_001409610.1  proteasome subunit alpha type-7-A

      Status: VALIDATED

      Source sequence(s)
      AK098875, CA754778, CI449527, CI681232
      UniProtKB/Swiss-Prot
      A2YXU2, A2ZQE3, B9ETZ1, O04861, Q69JF0, Q6YT00, Q9LRI3
      UniProtKB/TrEMBL
      B8B9D7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27680386..27684202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YT00.1 GenPept UniProtKB/Swiss-Prot:Q6YT00

    Gene LinkOut

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