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    LOC4333598 uncharacterized LOC4333598 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333598, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333598
    Gene description
    uncharacterized LOC4333598
    Locus tag
    OSNPB_030652100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 22.9), leaves before flowering (RPKM 20.8) and 6 other tissues See more
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    Genomic context

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    See LOC4333598 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (26199854..26210983)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (25334283..25345012)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938331 Neighboring gene multiple C2 domain and transmembrane region protein 14 Neighboring gene uncharacterized LOC136355672 Neighboring gene uncharacterized LOC136355876

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4333598
    Names
    Os03g0652100
    general negative regulator of transcription subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      26199854..26210983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776827.3 → XP_015632313.1  uncharacterized protein LOC4333598 isoform X1

      UniProtKB/TrEMBL
      Q10FX7
      Conserved Domains (4) summary
      COG5665
      Location:12 → 856
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 233
      Not3; Not1 N-terminal domain, CCR4-Not complex component
      pfam04153
      Location:714 → 852
      NOT2_3_5; NOT2 / NOT3 / NOT5 family
      pfam08690
      Location:260 → 310
      GET2; GET complex subunit GET2

    2. XM_015776828.3 → XP_015632314.1  uncharacterized protein LOC4333598 isoform X2

      UniProtKB/TrEMBL
      A0A0P0W0W0, B8ANJ0, Q10FX7, Q7XZZ2
      Conserved Domains (3) summary
      COG5665
      Location:12 → 849
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 226
      Not3; Not1 N-terminal domain, CCR4-Not complex component
      pfam17823
      Location:245 → 477
      DUF5585; Family of unknown function (DUF5585)
    Nucleotide Protein
    Heading Accession and Version

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