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    LOC4333500 protein DA1-related 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333500, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4333500
    Gene description
    protein DA1-related 1
    Locus tag
    OSNPB_030626600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 19.9), roots after flowering (RPKM 18.1) and 6 other tissues See more
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    Genomic context

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    See LOC4333500 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (24715874..24722879)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (23854819..23861854)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import receptor subunit TOM6 homolog Neighboring gene type IV inositol polyphosphate 5-phosphatase 11 Neighboring gene protein DETOXIFICATION 29 Neighboring gene calcineurin B-like protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DA1-related 1
    Names
    Os03g0626600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      24715874..24722879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777232.3 → XP_015632718.1  protein DA1-related 1 isoform X1

      UniProtKB/TrEMBL
      B9F9T6
      Conserved Domains (3) summary
      cd09396
      Location:166 → 218
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:117 → 135
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:315 → 528
      DUF3633; Protein of unknown function (DUF3633)

    2. XM_066309060.1 → XP_066165157.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, Q0DQ72, Q5KQN3

    3. XM_026024183.2 → XP_025879968.1  protein DA1-related 1 isoform X2

      UniProtKB/TrEMBL
      B9F9T6
      Conserved Domains (3) summary
      cd09396
      Location:158 → 210
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:109 → 127
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:307 → 520
      DA1-like; Protein DA1

    4. XM_066309061.1 → XP_066165158.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, Q0DQ72, Q5KQN3

    5. XM_015777236.3 → XP_015632722.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, B9F9T6, Q0DQ72, Q5KQN3
      Conserved Domains (3) summary
      cd09396
      Location:124 → 176
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:75 → 93
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:273 → 486
      DA1-like; Protein DA1

    6. XM_015777234.3 → XP_015632720.1  protein DA1-related 1 isoform X3

      UniProtKB/TrEMBL
      B9F9T6, Q10GI7, Q5KQN4
      Conserved Domains (3) summary
      cd09396
      Location:142 → 194
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:93 → 111
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:291 → 504
      DA1-like; Protein DA1

    7. XM_066309062.1 → XP_066165159.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, Q0DQ72, Q5KQN3

    8. XM_015777239.3 → XP_015632725.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, B9F9T6, Q0DQ72, Q5KQN3
      Conserved Domains (3) summary
      cd09396
      Location:124 → 176
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:75 → 93
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:273 → 486
      DA1-like; Protein DA1

    9. XM_066309063.1 → XP_066165160.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, Q0DQ72, Q5KQN3

    10. XM_026024184.2 → XP_025879969.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, B9F9T6, Q0DQ72, Q5KQN3
      Conserved Domains (3) summary
      cd09396
      Location:124 → 176
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:75 → 93
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:273 → 486
      DA1-like; Protein DA1

    11. XM_015777238.3 → XP_015632724.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, B9F9T6, Q0DQ72, Q5KQN3
      Conserved Domains (3) summary
      cd09396
      Location:124 → 176
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:75 → 93
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:273 → 486
      DA1-like; Protein DA1

    12. XM_015777235.3 → XP_015632721.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, B9F9T6, Q0DQ72, Q5KQN3
      Conserved Domains (3) summary
      cd09396
      Location:124 → 176
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:75 → 93
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:273 → 486
      DA1-like; Protein DA1

    13. XM_066309059.1 → XP_066165156.1  protein DA1-related 1 isoform X3

      UniProtKB/TrEMBL
      Q10GI7, Q5KQN4

    14. XM_015777233.3 → XP_015632719.1  protein DA1-related 1 isoform X1

      UniProtKB/TrEMBL
      B9F9T6
      Conserved Domains (3) summary
      cd09396
      Location:166 → 218
      LIM_DA1; The Lim domain of DA1
      smart00726
      Location:117 → 135
      UIM; Ubiquitin-interacting motif
      pfam12315
      Location:315 → 528
      DUF3633; Protein of unknown function (DUF3633)

    15. XM_066309064.1 → XP_066165161.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, Q0DQ72, Q5KQN3

    16. XM_066309066.1 → XP_066165163.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, Q0DQ72, Q5KQN3

    17. XM_066309067.1 → XP_066165164.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, Q0DQ72, Q5KQN3

    18. XM_066309065.1 → XP_066165162.1  protein DA1-related 1 isoform X4

      UniProtKB/TrEMBL
      A0A5S6R9N2, Q0DQ72, Q5KQN3
    Nucleotide Protein
    Heading Accession and Version

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