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    LOC4350894 LRR receptor kinase SERK2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350894, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350894
    Gene description
    LRR receptor kinase SERK2-like
    Locus tag
    OSNPB_110607200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves after flowering (RPKM 261.7), roots after flowering (RPKM 250.2) and 3 other tissues See more
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    Genomic context

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    See LOC4350894 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25381242..25386740, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23431298..23436802, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936835 Neighboring gene disease resistance protein Pik-2-like Neighboring gene disease resistance protein Pikm1-TS-like Neighboring gene disease resistance protein Pik-2-like Neighboring gene pentatricopeptide repeat-containing protein At4g19890 Neighboring gene mannose/glucose-specific lectin Neighboring gene uncharacterized LOC9266760 Neighboring gene uncharacterized LOC136351138

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LRR receptor kinase SERK2-like
    Names
    Os11g0607200
    probable LRR receptor-like serine/threonine-protein kinase At5g10290

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25381242..25386740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021158.2 → XP_025876943.1  LRR receptor kinase SERK2-like

      UniProtKB/TrEMBL
      B8ARZ7, B9EV79, Q2R1F2, Q2R1F3
      Conserved Domains (4) summary
      PLN03150
      Location:17 → 155
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:97 → 182
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:113 → 136
      LRR_RI; leucine-rich repeat [structural motif]
      cl21453
      Location:286 → 558
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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