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    LOC4330991 protein HEADING DATE REPRESSOR 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330991, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330991
    Gene description
    protein HEADING DATE REPRESSOR 1-like
    Locus tag
    OSNPB_020793900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HDR1; OsJ_08697; OJ1249_F12.36
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    Genomic context

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    See LOC4330991 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34230496..34233435, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33734364..33737366, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable steroid-binding protein 3 Neighboring gene uncharacterized LOC9267161 Neighboring gene uncharacterized LOC4330992 Neighboring gene uncharacterized LOC4330994

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein HEADING DATE REPRESSOR 1
    Names
    OSNPB_020793900
    Os02g0793900
    P0700F06.24
    Protein HEADING DATE REPRESSOR 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416988.1 → NP_001403917.1  protein HEADING DATE REPRESSOR 1

      Status: VALIDATED

      Source sequence(s)
      AU182713, CI470564, CI483618, CI616780
      UniProtKB/Swiss-Prot
      B8AE37, Q6K678

    RNA

    1. NR_184404.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CI470564, CI616780, CI656416

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34230496..34233435 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6K678.1 GenPept UniProtKB/Swiss-Prot:Q6K678

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