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    LOC4329057 uncharacterized LOC4329057 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329057, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329057
    Gene description
    uncharacterized LOC4329057
    Locus tag
    OSNPB_020290400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1086_G08.4; OJ1756_H07.60
    Expression
    Ubiquitous expression in flower buds (RPKM 34.3), leaves after flowering (RPKM 27.6) and 6 other tissues See more
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    Genomic context

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    See LOC4329057 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (11019709..11022972)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10990427..10993770)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At5g08490 Neighboring gene uncharacterized LOC4329056 Neighboring gene phosphatidylinositol 4-kinase gamma 4-like Neighboring gene uncharacterized LOC4329059

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA (pseudouridine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329057
    Names
    Os02g0290400
    putative nucleolar essential protein
    ribosomal RNA small subunit methyltransferase nep-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      11019709..11022972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767951.3 → XP_015623437.1  uncharacterized protein LOC4329057

      UniProtKB/TrEMBL
      B8AFV1, Q0E1Y4, Q6K882, Q6K889
      Conserved Domains (1) summary
      cd18088
      Location:80 → 278
      Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1
    Nucleotide Protein
    Heading Accession and Version

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