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    LOC4350918 DNA-directed RNA polymerase I subunit rpa49 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350918, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4350918
    Gene description
    DNA-directed RNA polymerase I subunit rpa49
    Locus tag
    OSNPB_110615100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350918 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25861336..25864693)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23909847..23913312)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene probable GPI-anchored adhesin-like protein PGA55 Neighboring gene GRF1-interacting factor 2 Neighboring gene uncharacterized LOC107278077

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA polymerase I preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase I subunit rpa49
    Names
    Os11g0615100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25861336..25864693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759686.3 → XP_015615172.1  DNA-directed RNA polymerase I subunit rpa49 isoform X1

      UniProtKB/TrEMBL
      B9G8J6
      Conserved Domains (1) summary
      pfam06870
      Location:158 → 493
      RNA_pol_I_A49; A49-like RNA polymerase I associated factor

    2. XM_015759687.3 → XP_015615173.1  DNA-directed RNA polymerase I subunit rpa49 isoform X2

      UniProtKB/TrEMBL
      B9G8J6, Q0IRM8, Q2R177
      Conserved Domains (1) summary
      pfam06870
      Location:158 → 482
      RNA_pol_I_A49; A49-like RNA polymerase I associated factor
    Nucleotide Protein
    Heading Accession and Version

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