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    LOC4340270 uncharacterized WD repeat-containing protein C2A9.03 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340270, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4340270
    Gene description
    uncharacterized WD repeat-containing protein C2A9.03
    Locus tag
    OSNPB_060171900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340270 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3796077..3802819)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3632668..3639462)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357113 Neighboring gene uncharacterized LOC136357110 Neighboring gene pentatricopeptide repeat-containing protein At5g48730, chloroplastic Neighboring gene probable calcium-binding protein CML30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized WD repeat-containing protein C2A9.03
    Names
    GAMYB-binding protein
    OSJNBa0014B15.5
    Os06g0171900
    P0675A05.34
    putative GAMYB-binding protein
    putative WD-40 repeat family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      3796077..3802819
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788009.2 → XP_015643495.1  uncharacterized WD repeat-containing protein C2A9.03

      UniProtKB/TrEMBL
      A3B8U7, B8B3E8, Q0DE71, Q5SND4
      Conserved Domains (2) summary
      sd00039
      Location:202 → 240
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:254 → 436
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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