U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4330432 ubiquinol oxidase 1c, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330432, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4330432
    Gene description
    ubiquinol oxidase 1c, mitochondrial-like
    Locus tag
    OSNPB_020700400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AOX1c; OJ1111_E07.10
    Expression
    Biased expression in mature seeds (RPKM 23.0), leaves before flowering (RPKM 5.4) and 3 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4330432 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29302456..29304209, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28812361..28814174, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 20.2, cofactor of APC complex Neighboring gene myb family transcription factor PHL11 Neighboring gene polyamine transporter PUT1-like Neighboring gene cyclin-dependent kinase F-4-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Boeckmann B, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520024, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alternative oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative respiration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquinol oxidase 1c, mitochondrial-like
    Names
    Os02g0700400
    P0459B01.39
    alternative oxidase 1c

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29302456..29304209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768323.3 → XP_015623809.1  ubiquinol oxidase 1c, mitochondrial-like

      UniProtKB/Swiss-Prot
      Q8W855
      UniProtKB/TrEMBL
      A2X8M7
      Conserved Domains (1) summary
      PLN02478
      Location:13 → 345
      PLN02478; alternative oxidase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials