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    LOC4331910 ethylene-responsive transcription factor RAP2-13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331910, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4331910
    Gene description
    ethylene-responsive transcription factor RAP2-13
    Locus tag
    OSNPB_030191900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331910 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4791652..4792975, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4780247..4781580, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene putative pumilio homolog 7, chloroplastic Neighboring gene NDR1/HIN1-like protein 13 Neighboring gene serine carboxypeptidase 1 Neighboring gene uncharacterized LOC4331911 Neighboring gene protein SOSEKI 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor RAP2-13
    Names
    Os03g0191900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4791652..4792975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773644.3 → XP_015629130.1  ethylene-responsive transcription factor RAP2-13

      UniProtKB/TrEMBL
      A2XDF6, Q0DUD9, Q10QM1
      Conserved Domains (1) summary
      smart00380
      Location:112 → 171
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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