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    LOC4347145 uncharacterized LOC4347145 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347145, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4347145
    Gene description
    uncharacterized LOC4347145
    Locus tag
    OSNPB_090436000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1238_G07.9
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 9.2), flower buds (RPKM 9.1) and 6 other tissues See more
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    Genomic context

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    See LOC4347145 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20408916..20414947, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16029332..16035376, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable carboxylesterase 12 Neighboring gene probable carboxylesterase 2 Neighboring gene uncharacterized LOC112936446 Neighboring gene uncharacterized LOC4347147 Neighboring gene putative protease Do-like 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347145
    Names
    Os09g0436000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      20408916..20414947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304132.1 → XP_066160229.1  uncharacterized protein LOC4347145

      UniProtKB/TrEMBL
      A0A0P0XN45, B9G3S6

    2. XM_066304131.1 → XP_066160228.1  uncharacterized protein LOC4347145

      UniProtKB/TrEMBL
      A0A0P0XN45, B9G3S6

    3. XM_066304133.1 → XP_066160230.1  uncharacterized protein LOC4347145

      UniProtKB/TrEMBL
      A0A0P0XN45, B9G3S6

    4. XM_015795669.3 → XP_015651155.1  uncharacterized protein LOC4347145

      UniProtKB/TrEMBL
      A0A0P0XN45, B9G3S6
      Conserved Domains (1) summary
      cl21584
      Location:41 → 183
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

    5. XM_015795671.3 → XP_015651157.1  uncharacterized protein LOC4347145

      UniProtKB/TrEMBL
      A0A0P0XN45, B9G3S6
      Conserved Domains (1) summary
      cl21584
      Location:41 → 183
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
    Nucleotide Protein
    Heading Accession and Version

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