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    LOC4327752 probable mitochondrial import receptor subunit TOM20 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327752, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327752
    Gene description
    probable mitochondrial import receptor subunit TOM20
    Locus tag
    OSNPB_010921600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TOM20; OsJ_04580; OsJ_004482; OJ1485_B09.8
    Expression
    Ubiquitous expression in mature seeds (RPKM 124.4), flower buds (RPKM 91.7) and 6 other tissues See more
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    Genomic context

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    See LOC4327752 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40875469..40879366)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40240792..40244637)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component EXO70B1 Neighboring gene uncharacterized LOC136354900 Neighboring gene SNF1-related protein kinase regulatory subunit gamma-1 Neighboring gene F-box protein At1g67340 Neighboring gene uncharacterized LOC107281755

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein insertion into mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial outer membrane translocase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable mitochondrial import receptor subunit TOM20
    Names
    B1793G04.21
    LOC_Os01g69250
    Translocase of outer membrane 20 kDa subunit
    putative TOM20
    putative mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 KDA subunit)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401719.1 → NP_001388648.1  probable mitochondrial import receptor subunit TOM20

      Status: VALIDATED

      Source sequence(s)
      CF278242, CI162981, CI577710, CV733343
      UniProtKB/Swiss-Prot
      A2WYG9, A3A110, A6N041, B8A8F6, B9EVX6, Q5JJI4, Q8RZI8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40875469..40879366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JJI4.1 GenPept UniProtKB/Swiss-Prot:Q5JJI4

    Gene LinkOut

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