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    LOC4342421 protein TIFY 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342421, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342421
    Gene description
    protein TIFY 5
    Locus tag
    OSNPB_070153000
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    JAZ2; TIFY5; OsJAZ2; OsTIFY5
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    Genomic context

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    See LOC4342421 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (2815984..2818681, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (2801643..2804340, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene peroxisomal membrane protein 13 Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like Neighboring gene autonomous transposable element EN-1 mosaic protein Neighboring gene uncharacterized LOC4342422

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TIFY 5
    Names
    Jasmonate ZIM domain-containing protein 2
    LOC_Os07g05830
    OSJNBb0050B07.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421968.1 → NP_001408897.1  protein TIFY 5

      Status: INFERRED

      Source sequence(s)
      AP014963
      UniProtKB/Swiss-Prot
      A2YI92, Q0D8J9, Q69NY7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      2815984..2818681 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69NY7.1 GenPept UniProtKB/Swiss-Prot:Q69NY7

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