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    LOC4342538 protein tesmin/TSO1-like CXC 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342538, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342538
    Gene description
    protein tesmin/TSO1-like CXC 2
    Locus tag
    OSNPB_070176200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342538 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4080645..4087738)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4020306..4027427)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene type I inositol polyphosphate 5-phosphatase 4 Neighboring gene leucine-rich repeat extensin-like protein 6 Neighboring gene serine/threonine-protein kinase Nek3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein tesmin/TSO1-like CXC 2
    Names
    Os07g0176200
    Os07g0176300
    P0534H07.18
    putative CXC domain protein TSO1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4080645..4087738
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791204.3 → XP_015646690.1  protein tesmin/TSO1-like CXC 2

      UniProtKB/TrEMBL
      A0A0P0X3M2, B8B7N9, Q6ZEZ8
      Conserved Domains (1) summary
      pfam03638
      Location:467 → 504
      TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    Nucleotide Protein
    Heading Accession and Version

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