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    LOC4344507 beta-carotene isomerase D27, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344507, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4344507
    Gene description
    beta-carotene isomerase D27, chloroplastic-like
    Locus tag
    OSNPB_080114100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 27.3), leaves before flowering (RPKM 18.2) and 4 other tissues See more
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    Genomic context

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    See LOC4344507 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (760257..763457)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (751261..753205)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344504 Neighboring gene uncharacterized LOC4344505 Neighboring gene U2 spliceosomal RNA Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth. Lin H, et al. Plant Cell, 2009 May. PMID 19470589, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-carotene isomerase D27, chloroplastic-like
    Names
    Os08g0114100
    P0427G12.10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      760257..763457
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793211.3 → XP_015648697.1  beta-carotene isomerase D27, chloroplastic-like

      UniProtKB/TrEMBL
      A2YQM2, A3BP14, Q0J8F4, Q6YXS1
      Conserved Domains (1) summary
      pfam13225
      Location:151 → 233
      DUF4033; Domain of unknown function (DUF4033)

    RNA

    1. XR_001548025.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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