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    LOC4344478 phytolongin Phyl1.1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344478, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4344478
    Gene description
    phytolongin Phyl1.1
    Locus tag
    OSNPB_080110300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 44.8), flowers (RPKM 13.0) and 6 other tissues See more
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    Genomic context

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    See LOC4344478 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (545178..546948, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (539831..541727, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344476 Neighboring gene protein Rf1, mitochondrial Neighboring gene glycosyltransferase BC10-like Neighboring gene U-box domain-containing protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phytolongin Phyl1.1
    Names
    Os08g0110300
    P0007D08.29
    zinc finger (C3HC4-type RING finger) protein family -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      545178..546948 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027540.2 → XP_025883325.2  phytolongin Phyl1.1 isoform X2

      UniProtKB/TrEMBL
      B8BA50

    2. XM_015794902.3 → XP_015650388.1  phytolongin Phyl1.1 isoform X2

      UniProtKB/TrEMBL
      B8BA50
      Conserved Domains (1) summary
      pfam00957
      Location:179 → 241
      Synaptobrevin; Synaptobrevin

    3. XM_015794900.3 → XP_015650386.1  phytolongin Phyl1.1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XB18, B8BA50, Q0J8I3, Q6ZC59
      Conserved Domains (2) summary
      cl38905
      Location:38 → 124
      longin-like; Longin-like domains
      pfam00957
      Location:208 → 270
      Synaptobrevin
    Nucleotide Protein
    Heading Accession and Version

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